rs51456960 SNP Detail

Summary

• ID
  rs51456960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:103254472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGTCTGT GCTGGAAAAC
  AGATCTGAGG GTGGCCTCTT TGATTCTACT GGGTAAAAGG CAGAGTCTGA CAGGCTGGAA
  GCTAAGCCAA GGCTTGGCGT GGCTGACCTT GTAGAGGACG TAGATGAGCA GACCTAGGAG
  CAGGAGGCCA AAAAGAATGG CTAGGATGAT GATCCACAAC GGGACACCAT TGCTGCCTTC
  Y
  GCCTTGGTCC ACTGCACGGC TGTGGCCACC TGTGGACAAG CCAATGACAT TAAGAACCTG
  TGAATTCTTC CCGGCCTGTT CCTGGCTACC TCTGTCTGTT GGATCTGGAC CCAACTCTCA
  TTTTTTAGCT AACAGCATTC TGAACTTAAG AGTCTGAAGT GCACAAGTGT TTCTGTGTTC
  ACATGTGCTG TTTTCTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52584123	NES15645644	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51456960					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52584123	NES15645644	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103254472 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Itga5	integrin alpha 5 (fibronectin receptor alpha)			Coding-Synonymous
				mRNA-UTR
Rr404655	regulatory region 404655			1202 bp upstream
Rr510623	regulatory region 510623			1352 bp proximal
Tssr136772	transcription start site region 136772			1471 bp upstream
Tssr136773	transcription start site region 136773			1389 bp upstream
Tssr136774	transcription start site region 136774			1321 bp upstream
Tssr136775	transcription start site region 136775			1278 bp upstream
Tssr136776	transcription start site region 136776			1256 bp upstream
Tssr136777	transcription start site region 136777			1212 bp upstream
Tssr136778	transcription start site region 136778			1210 bp downstream