rs51461626 SNP Detail

Summary

• ID
  rs51461626
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26495680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGAC ATCCCAAGCA TGGTCTATGT
  K
  TACTGAGATC TAAAATCAGA TTCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52328563	NES15372024	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G		G	G	G	T		G
ss137439024	ENSMUSSNP5990513	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss323950906	CHEV_12_27130546	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51461626					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328563	NES15372024	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26495680 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	1292 bp distal
Rr464137	regulatory region 464137	694 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	1928 bp downstream
Tssr112999	transcription start site region 112999	1863 bp downstream
Tssr113000	transcription start site region 113000	1762 bp downstream
Tssr113001	transcription start site region 113001	1275 bp downstream
Tssr113002	transcription start site region 113002	1251 bp downstream
Tssr113003	transcription start site region 113003	1163 bp downstream
Tssr113004	transcription start site region 113004	1112 bp downstream
Tssr113005	transcription start site region 113005	1103 bp downstream
Tssr113006	transcription start site region 113006	736 bp downstream
Tssr113007	transcription start site region 113007	646 bp downstream
Tssr113008	transcription start site region 113008	478 bp downstream
Tssr113009	transcription start site region 113009	463 bp downstream
Tssr113010	transcription start site region 113010	273 bp downstream
Tssr115907	transcription start site region 115907	1980 bp upstream
Tssr115908	transcription start site region 115908	1936 bp upstream
Tssr115909	transcription start site region 115909	1852 bp upstream
Tssr115910	transcription start site region 115910	1798 bp upstream
Tssr115911	transcription start site region 115911	1750 bp upstream
Tssr115912	transcription start site region 115912	1736 bp upstream
Tssr115913	transcription start site region 115913	1701 bp upstream
Tssr115914	transcription start site region 115914	1653 bp upstream
Tssr115915	transcription start site region 115915	1610 bp upstream
Tssr115916	transcription start site region 115916	1569 bp upstream
Tssr115917	transcription start site region 115917	1519 bp upstream
Tssr115918	transcription start site region 115918	1504 bp upstream
Tssr115919	transcription start site region 115919	1473 bp upstream
Tssr115920	transcription start site region 115920	1441 bp upstream
Tssr115921	transcription start site region 115921	1065 bp upstream
Tssr115922	transcription start site region 115922	1040 bp upstream
Tssr115923	transcription start site region 115923	947 bp upstream
Tssr115924	transcription start site region 115924	887 bp upstream
Tssr115925	transcription start site region 115925	872 bp upstream
Tssr115926	transcription start site region 115926	521 bp upstream
Tssr115927	transcription start site region 115927	480 bp upstream
Tssr115928	transcription start site region 115928	1491 bp downstream
Tssr115929	transcription start site region 115929	1521 bp downstream
Tssr115930	transcription start site region 115930	1797 bp downstream
Tssr115931	transcription start site region 115931	1835 bp downstream