rs51461745 SNP Detail

Summary

• ID
  rs51461745
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43872164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATCACAA CTAGCCAACC
  ATGTATTTTG AAAAAGCTTC CAAAATCACA GAACATGAGA GGATTATAGC AAAAACCACC
  TCCACACCCT GCCCAGTGAA GAAGGGCGCC AGGTCCTTTC TGTGGTCATG TCTCTACTTG
  CCTGACAGCT TTGCTCACTG CAAAGCAAGT TATAGGCACA GTCTCCCTCA ACTTAAACAG
  S
  GAGCTTGGAA CCAGAAGGGC ACAAACAATC CTGGGCTGGT GATGGGGCCC AGCAACAAAC
  AGCGTGCTTA CTAACAAAAG GCCCTACGTT CAGTCTCCAT CAAAGAGGAA ACTTCAGGCA
  GTTCAGAGAG GAAGAAATGG AAGCTGCATT TTGCAGCTCC CTCTATCAGG GAAAGAACGA
  ATGCAAACTA AACTTTATGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52253970	NES15255738	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51461745					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52253970	NES15255738	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43872164 () rs orientation: forward

Symbol	Name	Function Class
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
Rr384605	regulatory region 384605	within coordinates
Rr430903	regulatory region 430903	within coordinates
Tssr97483	transcription start site region 97483	169 bp downstream
Tssr97484	transcription start site region 97484	1147 bp downstream
Tssr97485	transcription start site region 97485	1175 bp downstream
Tssr97486	transcription start site region 97486	1196 bp downstream
Tssr97487	transcription start site region 97487	1211 bp downstream
Tssr97488	transcription start site region 97488	1259 bp downstream