rs51461908 SNP Detail

Summary

• ID
  rs51461908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104699687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGTTAG GAAGTGAAAC
  TGGAACTGTA GAAAACCTGG ATGCACTATC TGGTTGGACC ACATACTGGC TCTGGAATCT
  GAGCCAAGTC CCTTTTGCCT GTGGGCTTAA CTTCTCCCTA CTGCAAAATG TGAATGAGAG
  TGAGACTTCT CCCAAAGGGT TGTCCTAAGA ACTAAATGCT GCTGACAGTG GCAGCTCATA
  Y
  TACACCAAGA TCAAACCCAT CTTAGATCTT AAGAGAAGTG GATCATTGGT TTTGTGACTG
  ATCAATACAA CCCAGCACAT AGCGAGCAGT TAAGATGTTG TTCAGCTAGC TTATAGGATG
  AGTGATTTCA GAGGGCCTCA GGGTGGTAGG GTTGGGGCCC TCAGGCCAAC TGCTCAATAG
  CCTTGTGTGT CAGGTGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60431838	NES15936312	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51461908					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431838	NES15936312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104699687 () rs orientation: forward

Symbol	Name	Function Class
Gm66976	predicted gene, 66976	within coordinates
Rhoc	ras homolog family member C	within coordinates
Rr77009	regulatory region 77009	686 bp distal
Rr77010	regulatory region 77010	1513 bp proximal
Tssr31060	transcription start site region 31060	1650 bp upstream
Tssr31061	transcription start site region 31061	1711 bp upstream
Tssr31062	transcription start site region 31062	1910 bp upstream
Tssr34890	transcription start site region 34890	309 bp upstream