rs51462294 SNP Detail

Summary

• ID
  rs51462294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30254476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACCGCACT TGTAACCTGT GTAGAATACC CCAAGGTGAC
  ACCAGAGTAC AGTGTAGTCA CCTAATTCTC CACATGGAGA AACTGCATGG GCTTTCCACA
  Y
  CAGAACATCC AAGCCTAGTC CACCAGTCCT ACCCACTAGT CCTGTTCTTG TAACATAATG
  CTCCTCTGCC CAGCCCACTT TCAGACTTAA AACTCCAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60990783	NES16136668	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	C	T		C	T	C	C
ss322135230	CHEV_7_31340070	CHEVERUD	SCREENING_POP	f	SNP								T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs51462294					SNP	T	T	C	T	C	C	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990783	NES16136668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30254476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18809	CpG island 18809	1517 bp distal
Cpgi18810	CpG island 18810	454 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	390 bp downstream
Tssr65780	transcription start site region 65780	1779 bp downstream
Tssr65781	transcription start site region 65781	1742 bp downstream
Tssr65782	transcription start site region 65782	257 bp downstream
Tssr65783	transcription start site region 65783	191 bp downstream
Tssr65784	transcription start site region 65784	167 bp downstream
Tssr65785	transcription start site region 65785	112 bp downstream
Tssr65786	transcription start site region 65786	99 bp downstream
Tssr65787	transcription start site region 65787	4 bp downstream
Tssr71789	transcription start site region 71789	363 bp upstream
Tssr71790	transcription start site region 71790	221 bp upstream