rs51463694 SNP Detail

Summary

• ID
  rs51463694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70213746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGTGAGC TTAGCATCTT GGCAAGGACC AAAGAGTTTT
  GTTGTTGTTT TTGTTGAGGA CAGGTGCAGT AGAGGTGTTC ATTGTTCAAA CTGGAGAGCC
  Y
  GAGGAGGGAG TTTGGAATTT CCCTATAGTC TGGAAGTTTC CATTGGACCT CCCTGAAACC
  TGATCTTTGA AGACAAAGCT TTAGGCTGAG CACCCATAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132369496	ENSMUSSNP1138186	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323735032	CHEV_11_70136422	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51463694					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70213746 () rs orientation: forward

Symbol	Name	Function Class
Alox12e	arachidonate lipoxygenase, epidermal	292 bp upstream
Cpgi3180	CpG island 3180	497 bp distal
Rr450275	regulatory region 450275	1068 bp distal
Tssr108941	transcription start site region 108941	444 bp upstream
Tssr108942	transcription start site region 108942	406 bp upstream
Tssr108943	transcription start site region 108943	383 bp upstream