rs51464023 SNP Detail

Summary

• ID
  rs51464023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46384972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTATTTTT CTTGACCTTG ATGGATGACA ACATCCAGGC
  GAAGAGAAAG AATAGGTAAA TTTTTTTTAA AACAGCCAGG CATTTTCCCC AGGCACATTT
  Y
  GAGTTACCCT TTTTGTCAAT AGTTCCAAGA AATATTAGAG TTGTAACATT AATAATAATG
  ACATACTGTC TAATGAATTA GTTGTCAAGC TTATCTTAAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60312988	NES15818145	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51464023					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312988	NES15818145	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46384972 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	792 bp upstream
Cpgi11001	CpG island 11001	631 bp distal
Cpgi11002	CpG island 11002	157 bp proximal
Gm59146	predicted gene, 59146	376 bp downstream
Rr405999	regulatory region 405999	1193 bp downstream
Rr406000	regulatory region 406000	549 bp downstream
Rr406001	regulatory region 406001	93 bp upstream
Rr548727	regulatory region 548727	1430 bp distal
Rr548728	regulatory region 548728	806 bp distal
Rr548729	regulatory region 548729	296 bp distal
Rr548730	regulatory region 548730	within coordinates
Rr548731	regulatory region 548731	208 bp proximal
Rr548732	regulatory region 548732	316 bp proximal
Rr548733	regulatory region 548733	1028 bp proximal
Rr548734	regulatory region 548734	1070 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	363 bp upstream
Tssr156751	transcription start site region 156751	1168 bp downstream
Tssr156752	transcription start site region 156752	1140 bp downstream
Tssr156753	transcription start site region 156753	352 bp upstream
Tssr156754	transcription start site region 156754	476 bp upstream
Tssr159650	transcription start site region 159650	777 bp upstream