rs51464324 SNP Detail

Summary

• ID
  rs51464324
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85425720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATATCCCC AGGACTCAGC
  ACTTGGAAGT ATAAGTAGTC ATGGATGCGT AAGCCTAAAG GAAAGAGTGT AGATGAAGGC
  CTCTCTGAAT AGGCTGATTC AGGTTTGGAG TATGGACTTC TTTTATGTCT TCAACTGGGT
  GGGCTATGGT CTGGGGCCAG AGACCCTGGC ATCAGCTGAC TGAATCCTTA GGGAGCGTGA
  Y
  TTTTGTTTTT AATTTTAACT TATTTTTTCA GAGTCTCGCT ATGTAGCCCT GACTAGCCTT
  TGATAGCCCC GACCCTCACC CTTAGTGCTG GAATTAAAGG TGTGTGCCAT CATACTCAGG
  AATCCTCTTT TTTTTTTAAT GGTCTCATAC TGCCCAGGCT GGCTTTGGAC TAGTTTTGTT
  TCCTTGGTGG GCCTTGAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906706	NES15956514	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51464324					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906706	NES15956514	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85425720 () rs orientation: forward

Symbol	Name	Function Class
Pradc1	protease-associated domain containing 1	within coordinates
Rr633222	regulatory region 633222	1408 bp proximal
Rr633223	regulatory region 633223	1789 bp proximal