rs51465378 SNP Detail

Summary

• ID
  rs51465378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77861212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACAAACA CACACAAATA
  CATAATAAAA TAAAACCTTT TAATTCAAAA AAAGACTTGC ATATTTATTA AAAATGCGAA
  TGAGGGGCCA GCAAGGTGGC CAGTGGATAA TGTGTTTGAC CAGAGTCTGT TTCTCAGGAT
  CCACATAAGG TGGAAGGACA CAGACGACTG CTCTCAGTGC TCCACAAGCA TGCCTTGGTA
  Y
  ATATACATGC ACACCACGCA TACACTACTA CTACTACTAA TTATTATTAT TTCAGTAATT
  TCGGATAGTT CCCAGGACCT GAGGACTAAA ACCCTCTGGG TGGCTGCACT GTGCAAGAGC
  TACCCCGGCC TGCCACAGCA CTGCGGTGAA ACCCCACCAG CACGATTAAC CTAGCTCTTA
  GTCTAGGCAG CCCGCCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147555352	ENSMUSSNP3940261	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51465378					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77861212 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	256 bp upstream
Cpgi10281	CpG island 10281	131 bp proximal
Haus1	HAUS augmin-like complex, subunit 1	within coordinates
Rr393942	regulatory region 393942	within coordinates
Rr541176	regulatory region 541176	within coordinates
Rr541177	regulatory region 541177	228 bp proximal
Rr541178	regulatory region 541178	364 bp proximal
Rr541179	regulatory region 541179	455 bp proximal
Tssr152041	transcription start site region 152041	472 bp upstream