rs51465820 SNP Detail

Summary

• ID
  rs51465820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134947173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAACCGC TGAGCCATCT
  CTCCAGCCCC TATGCTAATC ATTATTAATA ATAATTTATC ATCATAAGGT ATGACCAATG
  AAAAAAAGAC ACAGGTACTA ACTAGGAGGT TCCAAAATGA AAGGAACGAA GTTGTGAAGT
  TCAGCACACC GAGACCAACC ACTGGGGGGC AGCAGCAGAG CAGCAGAAAG TCATCTGTCT
  R
  GAAGCTAGGA GGGCTGCTTA GCACTCCATC TCTATCTCTA AGAAGCTATT CAAAACACAA
  ACAAAAAAGC AGTATAGTAT ACACAGCTGA AAATTAATTA TATTAAAATT AAAAATAATA
  CTTTTGGCCT AAGAAAATAT GGAAATGAAC ACCTGCAGTT CGTGGAAATA CAAACTGGTA
  CAGACTTTGA AATTTTGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147541632	ENSMUSSNP6265792	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss321351236	CHEV_4_134775777	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51465820					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134947173 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	1973 bp distal
Rr86244	regulatory region 86244	within coordinates
Rr102925	regulatory region 102925	229 bp proximal
Tssr43965	transcription start site region 43965	1208 bp upstream