rs51466554 SNP Detail

Summary

• ID
  rs51466554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:77041042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTGGAA GAACCCGAAG
  GGTTATAAAA TTCCACTGGA TAAATGGCTG GCTTCTGATG AAAGGCTTCA CATGAGTCAT
  ATAAGTGAAA AATTTGACAA ACTGGCTGAA GTGCTTTCCA GAGCAGCTGT GAGCCCACAT
  CAGTTTACCT CAGTTCCAGA GGGAAACTGA CGTGTGTGTG TATGATAATA GCAGAAGAGG
  Y
  TAGTGCAGCT AAGGAGGTTT GACGAGCTGA AGGAGTTGAA GCTGAGTAAG GAATTCCAGG
  ACTTAGAGGA AGTGATGGAG AAGAGTATCA GAGAAGCCCT GGGCCATCAG GAGAGGCTGA
  AAGCTGAGCA TCGACACAGA GCCAAGATTC TCAAGCTAAC GCTTCCAGAG GCAGAGCAGC
  GGCAGCAATA GCAGCAGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss144722386	ENSMUSSNP3016643	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs51466554					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:77041042 () rs orientation: forward

Symbol	Name	Function Class
Gm70876	predicted gene, 70876	within coordinates
Tfdp1-ps	transcription factor Dp 1, pseudogene	1465 bp upstream
Tssr7562	transcription start site region 7562	1461 bp upstream