rs51467895 SNP Detail

Summary

• ID
  rs51467895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22714434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCCTAAA CTCTCAGCAG
  CGCTGTCCCA AACTGAGCCA GTTCAACATA GGTCAGCCAC AGGCAGAAGG CAGGTAACAC
  CCTGGCCTCC TGGCTTTACC TAACACTTAA TAGCAGGGCT CTCTGTTCAG ACACAATACA
  TTCACCGGGT GCCACACGTT TACACCCTGC CAGTAACATC TGCCGCAGTC TGGGAATCAA
  Y
  ACTAACAAAG GTATGGGCAA ATACTGGAAG GTTCCTAATC TGCCTTTCAA ATCCAGGTTT
  TGAGGTTGGG AGGGGACCAT CTAATTGTAT AGCCAAAGCA ACTATTTGAG TGCAATAGAC
  TTGAGATGTT TAAGGAAGCT GGCAATGGAA ATAAGTCAAG ACATACTTGC AAATACATTA
  GTGTAGGTGG TGATTCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63681310	NES17064333	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51467895					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63681310	NES17064333	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22714434 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1298 bp upstream
Rr513336	regulatory region 513336	1354 bp distal
Rr513337	regulatory region 513337	888 bp distal
Tssr4819	transcription start site region 4819	343 bp downstream
Tssr4820	transcription start site region 4820	263 bp upstream
Tssr137563	transcription start site region 137563	1443 bp downstream
Tssr137564	transcription start site region 137564	1413 bp downstream
Tssr137565	transcription start site region 137565	1276 bp downstream
Tssr137566	transcription start site region 137566	1267 bp downstream
Tssr137567	transcription start site region 137567	899 bp downstream
Tssr137568	transcription start site region 137568	868 bp downstream
Tssr137569	transcription start site region 137569	847 bp downstream
Tssr137570	transcription start site region 137570	830 bp downstream
Tssr137571	transcription start site region 137571	492 bp downstream
Tssr137572	transcription start site region 137572	393 bp downstream
Tssr137573	transcription start site region 137573	383 bp downstream
Tssr137574	transcription start site region 137574	364 bp downstream
Tssr137575	transcription start site region 137575	354 bp downstream
Tssr137576	transcription start site region 137576	316 bp upstream
Tssr137577	transcription start site region 137577	738 bp upstream
Tssr137578	transcription start site region 137578	809 bp upstream
Tssr140504	transcription start site region 140504	1292 bp upstream
Tssr140505	transcription start site region 140505	1243 bp upstream
Tssr140506	transcription start site region 140506	823 bp upstream
Tssr140507	transcription start site region 140507	460 bp upstream
Tssr140508	transcription start site region 140508	418 bp upstream
Tssr140509	transcription start site region 140509	400 bp upstream
Tssr140510	transcription start site region 140510	352 bp upstream
Tssr140511	transcription start site region 140511	338 bp upstream
Tssr140512	transcription start site region 140512	873 bp downstream
Tssr140513	transcription start site region 140513	884 bp downstream
Tssr140514	transcription start site region 140514	917 bp downstream