rs51470236 SNP Detail

Summary

• ID
  rs51470236
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68943515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGGTGCGTGC ATTGAGACTC CCACCAATGC CAAGTGACAG
  GAATGCATCG GCAGGTGCGT GCATTGAGAC TCCCACCAAT GCCAAGTGAC AGGAATGCAT
  S
  GGCAGGTGCG TGCATTGAGA CTCCCACCAA TGCCAAGTGA CAGGAATGCA TGGGCAGGTG
  CGTGCATTGA GACTCCCACC AATGCCGAGA AGTTGCAAAA G                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146726986	ENSMUSSNP3107210	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51470236					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68943515 () rs orientation: forward

Symbol	Name	Function Class
Cers6	ceramide synthase 6	within coordinates
Rr44228	regulatory region 44228	115 bp distal
Rr44229	regulatory region 44229	686 bp proximal
Rr50098	regulatory region 50098	686 bp proximal
Tssr18099	transcription start site region 18099	1993 bp downstream
Tssr18100	transcription start site region 18100	588 bp downstream
Tssr18101	transcription start site region 18101	389 bp upstream
Tssr18102	transcription start site region 18102	411 bp upstream
Tssr18103	transcription start site region 18103	633 bp upstream
Tssr18104	transcription start site region 18104	1550 bp upstream