rs51470869 SNP Detail

Summary

• ID
  rs51470869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115080598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGC ACTGTGATTT TGTTTTTATC
  Y
  TAATTGTGAA GGAAGAGAGA TGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss132872496	ENSMUSSNP5597629	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T		C
ss323861648	CHEV_11_115051086	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51470869					SNP	C	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115080598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	1805 bp distal
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	1916 bp upstream
Rr459795	regulatory region 459795	1939 bp distal
Rr459796	regulatory region 459796	1497 bp distal
Rr459797	regulatory region 459797	1162 bp distal
Rr459798	regulatory region 459798	738 bp distal
Rr459799	regulatory region 459799	146 bp distal
Tmem104	transmembrane protein 104	within coordinates
Tssr3729	transcription start site region 3729	1092 bp upstream
Tssr3730	transcription start site region 3730	145 bp downstream
Tssr111734	transcription start site region 111734	1936 bp upstream
Tssr111735	transcription start site region 111735	1904 bp upstream
Tssr111736	transcription start site region 111736	998 bp upstream