rs51471314 SNP Detail

Summary

• ID
  rs51471314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52653718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTAGCCAG GACTAAAACA
  AAAACAAGCA AAAAAATTGT TTAAGATCCC ACATTAACAG TTTAATTTTA AAAATCCTGC
  TCTTTTACCC TAAAGTATAT GTGATCAACC AGTCTTTTCA TGGGGAAATA CTGGTTTTTA
  TTACATCTTC TAAGAGGCAT TTAGGAAAGT TTGCAGTAGG TGGGTCTCTT TTAAAGTAGT
  Y
  GAACCTTGAA TTAAGATTTG CTTTTGTGAG AATAAGTTTA ATAGGCATGG TTAACAACTT
  AGCTTTAGGA GACATTTATT TGAAGGATTT CCTCAGATTT TTTTAAATAA GGAAAAACTT
  ATTTTTGTAT TCTGGAACAT TTGGACTTTA TTGTTAGTAA ATATTATTGT CATAATAATC
  CTACTTGTTC ACATTAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52423941	NES15399032	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	T	C	C	C	C	C	C	T	C
ss137738396	ENSMUSSNP1619832	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51471314					SNP	T	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52423941	NES15399032	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52653718 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4597	CpG island 4597	1900 bp distal
Gm35239	predicted gene, 35239	within coordinates
Gm59577	predicted gene, 59577	1126 bp upstream
Rr369517	regulatory region 369517	1952 bp downstream
Rr466028	regulatory region 466028	1275 bp distal
Tssr113445	transcription start site region 113445	703 bp upstream