rs51471587 SNP Detail

Summary

• ID
  rs51471587
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70908572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTTGTACC AGAACTGAGT TTATGAGCTG GCCCAAGAGG
  ACTAACAACA GTGGTAGGTA GGTGTGTCTG GGTGGAAAAA ACACAAAATA AGGCTGGCTA
  W
  CCTGTGAAAC TCCCTGGGCA GCCAGCTCAT CAGTCTATTC TCAGATCACA TTATTATTAC
  TGTTGTTGTC GTTGTTGGTT GTTGTTCCTG TTGTTTGTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss132379908	ENSMUSSNP2897262	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss323738894	CHEV_11_70831248	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51471587					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70908572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	1218 bp proximal
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	1865 bp upstream
Rr402697	regulatory region 402697	1459 bp upstream
Rr450471	regulatory region 450471	1486 bp proximal
Rr450472	regulatory region 450472	1876 bp proximal
Tssr102806	transcription start site region 102806	1824 bp upstream
Tssr102807	transcription start site region 102807	1847 bp upstream
Tssr102808	transcription start site region 102808	1880 bp upstream
Tssr102809	transcription start site region 102809	1895 bp upstream
Tssr109052	transcription start site region 109052	752 bp downstream
Tssr109053	transcription start site region 109053	1487 bp downstream
Tssr109054	transcription start site region 109054	1524 bp downstream