rs51471769 SNP Detail

Summary

• ID
  rs51471769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59952282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCTGGGC AGGGAAGTTG
  AACTTTATAT GGTGTCTTCC CTTAAGGAAT TGGATGTGTA AATAAGGCAG AGGGAAGCAT
  AAACCTTACA TGGCTGGATG TCACCAGAGC AACGCTAGAC TCTCCAAGGT AGGCTAAGCA
  GGTGAGGGCG GGGTTGGAAA GGAGCTGGGT TGTGACAGAC AACTGAGGTC TGGGGTCAGA
  Y
  GTGGATACAT GTGCAGAGCG GAGAAGGCAG CTGTGCAAAG CCATGGCCTA CTGAGAGACC
  CCTGGGTGGA CAGTGGACGC AGTGGCCAGA CACAGATGAA AAGATGAACC TTCTTCTGGA
  GGTGTTGGGG AACCAGGGAA GGGTTTCTAA ATGTAACATT TATAGTGATC CCCTCCTTTC
  CTATAAAAGC AATAGGTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52322447	NES15286481	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs51471769					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52322447	NES15286481	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59952282 () rs orientation: forward

Symbol	Name	Function Class
Gm51801	predicted gene, 51801	within coordinates
Gm66809	predicted gene, 66809	689 bp upstream
Rr219869	regulatory region 219869	1719 bp proximal
Spock2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	within coordinates
Tssr93522	transcription start site region 93522	668 bp downstream