rs51474139 SNP Detail

Summary

• ID
  rs51474139
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123600889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAGGCTC ATATATTTTA
  ATGCTTAGTC TTCAGGGAGT GGCACTAGTT GAGAGGGATC AGGAGGTGTG GCCATACTGG
  AGGAAATCTG TCACTGGGGG TGGGCTTTGA GGTTTTGGAA ACTCAAGTCA GGCCCCGTGT
  CTTACCCTTC CTCCTGCCTG TAGATCCAGA TGTAGAACTC GGCTACTTCT TTAGCACCAT
  K
  TCTTCCTGTC TGTTGCCATT CTTTCCAGCA GGATGAGAAG GACTAAACCT CTTAACCTAT
  AAGCCATCCC CAAATAAATG TTTTCTTTTA TGAGCTGCCA TTGTTATTAT GTCTCTTCAC
  AGCAACAGTA TACTGGCTAA GGCATAGTTT TACTAATTTT TACTTTAGTA AGTAATATTA
  GACTTTCATT AATTGAGTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135773713	ENSMUSSNP2375148	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss320923136	CHEV_3_123510158	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51474139					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123600889 () rs orientation: forward

Symbol	Name	Function Class
Rr584566	regulatory region 584566	972 bp distal