rs51474236 SNP Detail

Summary

• ID
  rs51474236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34573471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGATTTC TGAGTTCGAG
  CCCAGCCTGG TCTACAGAAT TCCAGGACAT CCAGGGCTAC ACAGAGAAAT CCTGTCTCGA
  AAAACTCAAA ACAAAACAAA TAACAACAAA ACCAATAAAA ATTGTAAGCC TCAGCGTAAC
  AGACACAAAC AACTGGACTG AAAGGAGAAG CGCTAAAGTT GGTTACCCAG CATTAGCTCT
  Y
  GAGAAACATC AACCATTTTC TTACCTATGG TTACATCTCC TCTGATTTCG CTTTCTACAC
  ACACTACTGC TCCGGGAGCA ATCTTCACAC TGTAGGAAGA AAGAGAACAC TCATCCTGAG
  TAACACTGAA AGTATGGACG GTGGGTGAGA GGGCTCCATG GATAAAGCCC TGCTGTGTTA
  AGCCCAGTGA CCCATTCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60592255	NES16320181	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51474236					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592255	NES16320181	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34573471 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	1798 bp proximal
Dctn6	dynactin 6	within coordinates
Rr661952	regulatory region 661952	586 bp proximal
Rr661953	regulatory region 661953	1018 bp proximal
Rr661954	regulatory region 661954	1525 bp proximal
Rr661955	regulatory region 661955	1534 bp proximal
Tssr80889	transcription start site region 80889	1445 bp downstream
Tssr80890	transcription start site region 80890	1499 bp downstream