rs51474849 SNP Detail

Summary

• ID
  rs51474849
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78633664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAA GTACTAAGAT TAAAGTTGTG
  W
  GTCATCACAC CCTGTTGTTT CAAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss144751842	ENSMUSSNP5287145	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss319804026	CHEV_1_78652522	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs51474849					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78633664 () rs orientation: forward

Symbol	Name	Function Class
Acsl3	acyl-CoA synthetase long-chain family member 3	1936 bp upstream
Cpgi461	CpG island 461	1547 bp proximal
Rr17618	regulatory region 17618	537 bp proximal
Rr29694	regulatory region 29694	1136 bp proximal
Rr371565	regulatory region 371565	247 bp downstream
Rr396121	regulatory region 396121	1750 bp upstream
Tssr7581	transcription start site region 7581	1909 bp upstream
Tssr7582	transcription start site region 7582	1927 bp upstream
Utp14b	UTP14B small subunit processome component	1936 bp upstream