rs51474925 SNP Detail

Summary

• ID
  rs51474925
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149211627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAGTAGG CCAACTACAG
  AACTTGCGTG GGGATTTAAA TTGTCTGCTG GGTGTGTTAC AGTTAAGGGG AATCTTAAGT
  TTGTTTCTTG TTACCATTCA GATATACTAA GGTCTTAGTT ATTGCTCCAC TCAGCCCCCA
  TCAGGTTCTC TTTTATCAGT CCACTAAAAT TACTAAAGAA GTATTTTTGC TTTGGTATTA
  W
  AGGGCAGTAG TGGACTTGGA GAAGCCCGCT TGAATTCTAG TGGCAGGGAA TATTTTGAGA
  GTAGCCTAAT TCAGTAGTTT TGTTTTTAGC ACAATTGAAA TAAATTCAGT AAACTTAGTA
  TGGTCTCAAT GACACTGTAA GGGAAATGTA CTAGACCTTA ACTCTTGCTT TCTTGTTTCT
  TGATTTTCAT AGAATTAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60961292	NES16169788	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51474925					SNP	A	A	A	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961292	NES16169788	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149211627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18192	CpG island 18192	256 bp distal
Gm56997	predicted gene, 56997	454 bp upstream
Resf1	retroelement silencing factor 1	within coordinates
Rr380294	regulatory region 380294	77 bp downstream
Rr380295	regulatory region 380295	1361 bp upstream
Rr641718	regulatory region 641718	1886 bp distal
Rr641719	regulatory region 641719	645 bp distal
Rr641720	regulatory region 641720	787 bp distal
Rr641721	regulatory region 641721	738 bp distal
Rr641722	regulatory region 641722	465 bp distal
Rr641723	regulatory region 641723	within coordinates
Rr641724	regulatory region 641724	494 bp proximal
Tssr59650	transcription start site region 59650	811 bp downstream
Tssr59651	transcription start site region 59651	691 bp downstream
Tssr59652	transcription start site region 59652	647 bp downstream
Tssr59653	transcription start site region 59653	571 bp downstream
Tssr59654	transcription start site region 59654	374 bp downstream
Tssr59655	transcription start site region 59655	305 bp downstream
Tssr59656	transcription start site region 59656	199 bp upstream
Tssr64179	transcription start site region 64179	479 bp upstream
Tssr64180	transcription start site region 64180	444 bp upstream