rs51475188 SNP Detail

Summary

• ID
  rs51475188
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117937259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTAATT GAATGATGTT
  GGCCTTGCCT CTGTCAAGAA GGTTCTGAGA CTGTGTTCCA ACTCAGTGGT TGGGGATGAG
  GCAGAAGTGG CTTTAAAGTT CTATGTATTT GCTTCCTTGG TTTGGGGCAT TACCTCATTG
  TTCCCTGTAA TGACTTTTGG GGGTTTAGAT GTCCAAAATT AGCTTGTTGG ATGCTACTTG
  R
  CTGGTGCTGA CTCATGGAAG AAAAAGTTCT TATGTTCAAG GCTAAAAAGT ATACCTTGAT
  TCTTTTAAAA CATCTCTCCC TCTCTCTCCC TTCTTTCCTT CTTTCCTTCC TTCCTTTTTA
  CTGGCAGAAA TGAGGGGTGT TCGTTGTTAA ACGTTTGGCA AATCACACAG AAGTATCTGG
  AATAAAACAA GAGCACTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52223854	NES15336073	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51475188					SNP	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52223854	NES15336073	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117937259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2246	CpG island 2246	1844 bp proximal
Gm66186	predicted gene, 66186	1669 bp downstream
Gm66289	predicted gene, 66289	147 bp upstream
Rr369079	regulatory region 369079	1857 bp upstream
Rr402279	regulatory region 402279	365 bp downstream
Tssr3367	transcription start site region 3367	607 bp upstream
Tssr99497	transcription start site region 99497	1887 bp downstream