rs51476541 SNP Detail

Summary

• ID
  rs51476541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:28312842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTTTCT GAGGTTGTTA
  CTTCACAGGC ACAAGCCTCA GTGTGTGTTA TTGAGGACTC TTATCTCCAC GTCAGCTCAT
  CTCTGCTTCT GTTTTTCACC AGCCTCAGTC ATCCTCGTCC CATCTGGAAA TTTGCACATG
  TTTCTTCTTT CTTCACATTT CCAATAACTC TTCCTATCTC AAGCCACCTT TCCTGAGTTA
  R
  TGCAACAATA GCCTCACCCT CACTTCCTGA TAAGAAATCA GACCAACAGG TGTCTGAGAA
  GATCTGAGGA GGATACCACT GAGCAGCAGG GACAGAGGAC CTGGGACCTT CTGACCAGGC
  TCAGCTTATA TCCTCACCCC TAAACAAGAT ACAGGTTCGG TGACAAGAAG TTCTAAGCAC
  AGGATCTCAT TGTCACCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136237828	ENSMUSSNP1664334	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51476541					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:28312842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21517	CpG island 21517	1308 bp proximal
Opcml	opioid binding protein/cell adhesion molecule-like	within coordinates
Rr206121	regulatory region 206121	1358 bp proximal
Tssr84179	transcription start site region 84179	1749 bp upstream
Tssr84180	transcription start site region 84180	1934 bp upstream
Tssr84181	transcription start site region 84181	1967 bp upstream
Tssr84182	transcription start site region 84182	1992 bp upstream