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rs51477156 SNP Detail
Summary
  • ID
    rs51477156
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr9:23497858 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTCATAGCA GTATTAGTTC
    ATTTTTCAAT GCTATAATAA AATACTTGAG GCATGCTAAC TTTATAAGTA AAATAGGTGT
    ATTTAGCTCA TAGTTCTTCG AATTAAGGAC CTACCATCAG CTCTCATGGC AGATGGATTC
    ACAATAGGGA GAGTTTGTAT TAATGAGGAA GAAATACCCA TGAGAAGAAA GAGCATGAGA
    R
    GAACTGGAGT CCACAATTCT TCCAAGAGTA TATCCCCAAT AGCCTCAGTC AGTTCCATTT
    GGTCCTCTCT TAACATGTCT CACTGGAGAT CAAGTGTCTA ACACACAAGA TGTTAGGGGA
    CAGCTATGGT AATACATAAA ACACAACATG TTTTAAAGTC ATTCTGCCTA CTGTGCCTCA
    AATTGAATGA TGAGTTGTTC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss61361358 NES16736265 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G A G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs51477156 SNP G G G G G G G G G A G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61361358 NES16736265 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:23497858 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm39311 predicted gene, 39311 within coordinates
Rr383080 regulatory region 383080 2000 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory