rs51477174 SNP Detail

Summary

• ID
  rs51477174
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17463131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCT TTTCAATTTC TTTTAATATT
  Y
  GAGATTTGAA CTTATGTGTT GGATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133014993	ENSMUSSNP6446759	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss321754660	CHEV_6_17413132	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51477174					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17463131 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	183 bp proximal
Met	met proto-oncogene	668 bp upstream
Rr626799	regulatory region 626799	178 bp proximal
Rr626800	regulatory region 626800	342 bp proximal
Rr626801	regulatory region 626801	385 bp proximal
Rr626802	regulatory region 626802	917 bp proximal
Tssr55050	transcription start site region 55050	300 bp upstream
Tssr55051	transcription start site region 55051	423 bp upstream
Tssr55052	transcription start site region 55052	617 bp upstream
Tssr55053	transcription start site region 55053	694 bp upstream
Tssr55054	transcription start site region 55054	753 bp upstream
Tssr55055	transcription start site region 55055	769 bp upstream
Tssr55056	transcription start site region 55056	795 bp upstream
Tssr55057	transcription start site region 55057	960 bp upstream
Tssr55058	transcription start site region 55058	1000 bp upstream
Tssr55059	transcription start site region 55059	1039 bp upstream