rs51477518 SNP Detail

Summary

• ID
  rs51477518
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTTCTG GGTTGATGGT
  ATGTGCCTTT AATCCCAGCA GTCTGGAGGC AGAAGGAGGG TCCATATAGC AAAATCCAGG
  TGAGCCAGGG CTGCATAGTG AGATCCTGTC GTATTTTTAA ATTATTGCTT CATTTTTATC
  ACATCTTTAA CATTTTAAGT GTGCTATGTA ATGTATATTA GCAGTCATGT GAGTATCATT
  K
  ATAAATATGT AGATTGCAAG CATCAGGCTA TGAAGTAGAA AGAATAAAAT TTGGTGCTTA
  AATGAGACAG CTGTGAAGTG AATGAAAACT CACAGTAGCA GTAACTCTGT GAAAGAGGCA
  CAAGTCAAAA GGTGGCTCCC CAGTGTGGCT TAAAGTGGGG GTGCTTGGGT GAGGTCACTG
  GTCAAGACTA AAACCACCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647314	ENSMUSSNP1928082	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
ss322398772	CHEV_7_117911066	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51477518					SNP	G	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366759 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	654 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	531 bp proximal
Rr653308	regulatory region 653308	241 bp proximal
Rr653309	regulatory region 653309	869 bp proximal
Rr653310	regulatory region 653310	1370 bp proximal
Tssr68503	transcription start site region 68503	511 bp upstream
Tssr68504	transcription start site region 68504	554 bp upstream
Tssr68505	transcription start site region 68505	586 bp upstream
Tssr68506	transcription start site region 68506	617 bp upstream
Tssr68507	transcription start site region 68507	1063 bp upstream
Tssr68508	transcription start site region 68508	1278 bp upstream
Tssr74265	transcription start site region 74265	1749 bp downstream