rs51478577 SNP Detail

Summary

• ID
  rs51478577
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34887008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATTGGGGT CTTGATTGTC CCCTTTCCCA GCCAGTAGGA
  AGTGGCACAC AGTAGGGATG CAGCCAAATA GCTCTCTTTC TGCCCTTTGA CCCCTGGAGA
  W
  AGAGAAAGGC TGAAGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGATCTT TACCTTCTGC
  TCTGTGCCCT TCCATGAGAA ACTCCAGCTG GAGAGATGTA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60993773	NES16130699	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51478577					SNP	A	A	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993773	NES16130699	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34887008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18861	CpG island 18861	788 bp distal
Rr645330	regulatory region 645330	1861 bp distal
Rr645331	regulatory region 645331	1188 bp distal
Rr645332	regulatory region 645332	1594 bp distal
Slc7a10	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	within coordinates
Tssr65893	transcription start site region 65893	1214 bp downstream
Tssr65894	transcription start site region 65894	1175 bp downstream
Tssr65895	transcription start site region 65895	1151 bp downstream