rs51478674 SNP Detail

Summary

• ID
  rs51478674
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80142287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGTACTG TCTACAGAGG
  TGAAAATGAG CAATGTAGGC AGGAAGCTGG GAAGGGAACC TAGGCTTCCA GCTCCAGGGT
  CCTGGGCTAC CTGCATCTTT ACCTCTTAAA TCTGGAAACT GTTAAAGCCT GCAGGGTTAA
  GAGGGATCTT TCAGCCTTCC CAATGCCAGT AGACTCACCT GAATGTTAGC TGTTGGGATG
  M
  ATGTAGTCCA TTGGGTTTGC TAATCTAGGA TTCCTAAAAC TATGGAATCC ACCCGTAGTC
  TGGCCAAGAG TGGAGGAAGC TGTAGAAACC TTGACAATGT CAGGTATGAC AAAAGGCTGG
  AAGTACTGCT TGCTCCCGTT TAGCCAGCCC AGACTGAAGC TGTTAGTTCT GGGCGCCTAT
  TAGCTGGCAG AGAACGGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148216333	ENSMUSSNP2342906	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51478674					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80142287 () rs orientation: forward

Symbol	Name	Function Class
Atf4	activating transcription factor 4	545 bp downstream
Cpgi7369	CpG island 7369	1733 bp distal
Rr505934	regulatory region 505934	222 bp distal
Tssr132204	transcription start site region 132204	1737 bp downstream
Tssr132205	transcription start site region 132205	1166 bp downstream
Tssr132206	transcription start site region 132206	951 bp downstream
Tssr132207	transcription start site region 132207	900 bp downstream
Tssr135434	transcription start site region 135434	545 bp upstream