rs51479054 SNP Detail

Summary

• ID
  rs51479054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:84565704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGATGTA AGGCATCTAG
  CATAGGTGCT GGAAAACAAA CTTGGGTTTT TCAGAAGAAG AGCTGGTGTT CTTCACGGCT
  GAGCTGTCGC TCTAGCCCCG GCCCTGCTGT TTCACAGAAA ATCTAGTTAG AGGAAGGAAG
  AATGAGACCA TGGGTGTGTG ACTCCCAATT CTGTGGACCA ACCGTGGGCA ACTGTATTCC
  Y
  CCCTTCCCCT GCAGGAGTTC CCCGAGTTGC TGCAGCTTGA CTACTCTGGC AGGGTGGGGC
  AAGAGTACAT AAACATGACA CATGTGTGGG GGACCCTGGC CACTTGGTGT GCGTCCAAAG
  TAGCAAGTGA CTCCATGTGG TTCAGGAAGA GGACACACAG ATAAGATACA AGGATAAACC
  AGTTCCATTT TGACTTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135427445	ENSMUSSNP6517163	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51479054					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84565704 () rs orientation: forward

Symbol	Name	Function Class
Gm37240	predicted gene, 37240	within coordinates
Rr68542	regulatory region 68542	104 bp distal
Rr68543	regulatory region 68543	497 bp proximal
Rr76452	regulatory region 76452	588 bp proximal
Rr83250	regulatory region 83250	1567 bp proximal