rs51479569 SNP Detail

Summary

• ID
  rs51479569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:75989787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC TCCACTGACT AGCACCAGGA
  Y
  TTCAGCCTTT CCCAGCTCTG GTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss52665256	NES15473173	PERLEGEN	MM_PANEL2	f	SNP			T			T	T		C
ss144639159	ENSMUSSNP4529401	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss324437241	CHEV_13_75979116	CHEVERUD	SCREENING_POP	f	SNP					C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs51479569					SNP	C	C	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52665256	NES15473173	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:75989787 () rs orientation: forward

Symbol	Name	Function Class
Glrx	glutaredoxin	within coordinates
Rr482793	regulatory region 482793	1748 bp distal
Rr482794	regulatory region 482794	301 bp proximal
Tssr120401	transcription start site region 120401	1787 bp downstream
Tssr120402	transcription start site region 120402	1740 bp downstream
Tssr120403	transcription start site region 120403	1624 bp downstream
Tssr120404	transcription start site region 120404	1583 bp downstream