rs51480073 SNP Detail

Summary

• ID
  rs51480073
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52209100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCGGCAGAA AGGAGCAGAG GGTTCCATCC CTGCTCTGGC
  TTTTGAGTTT CACTGAGAGC AGGGGAGCAG ATTGAATTTA CAATACTCCT TATTTTTTTT
  W
  TCTGAGGTTT AAATTATTAA TGAGTGTGTA TATGAATTAT ACCTATTTAT AAGCCAACTG
  GCTTCATCCC TTTACATAGA AGATTTTCAG GTTAGTTTCA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60261852	NES15764139	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51480073					SNP	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60261852	NES15764139	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52209100 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	901 bp proximal
Rr405357	regulatory region 405357	1723 bp upstream
Tssr148690	transcription start site region 148690	1848 bp downstream
Tssr148691	transcription start site region 148691	1878 bp downstream