rs51480164 SNP Detail

Summary

• ID
  rs51480164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30734558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGGGGCAC TACCACGTGA
  CCGAGCCCAG GAAGAAAAGG ACAACAGAGG AAGAGACGTG CACTCTAGGA ACAGCGCCCC
  CTGCTGCAAC CAGAACAACC GCCCAGCTGG ATGCAACCAG CAGGCTAGGC CGAGAATCAT
  CCCTGGGGTG GTTTGTAGGG GTGCTGAGTT TGCACAGCTT TGCCCAGGGG GTTTCAAGAC
  Y
  CTGATCCTCA GTCACCATGC AGCCCAGCCC GCCCCCAGCC CCTTCTTGCC CTTTCTGCCC
  ATGCCCGACT CTCACTAGTG AGAATGATAA TTCCCGTGAT GAACAGCACC GCAGCCACCA
  GCAGTCCCCG TTTCCGGAGG GTAGTATCAT CTGTGAAGAG AGAAATGGAG GGGCGGGGTC
  TTTGTTTTTT CTCCCCACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60989542	NES16136171	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51480164					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989542	NES16136171	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30734558 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	1710 bp upstream
Gm71772	predicted gene, 71772	1856 bp upstream
Rr644978	regulatory region 644978	775 bp distal
Rr644979	regulatory region 644979	54 bp distal
Rr644980	regulatory region 644980	109 bp distal
Rr644981	regulatory region 644981	1766 bp proximal
Rr644982	regulatory region 644982	1867 bp proximal
Tssr2191	transcription start site region 2191	327 bp downstream
Tssr65830	transcription start site region 65830	95 bp upstream
Tssr65831	transcription start site region 65831	1855 bp upstream
Tssr71891	transcription start site region 71891	1324 bp downstream
Tssr71892	transcription start site region 71892	1885 bp downstream