rs51480439 SNP Detail

Summary

• ID
  rs51480439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89363289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG TCTAACATGA GGATTTGGGG
  R
  TACATTCTTT TAATAGTTAT TATCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145481215	ENSMUSSNP491147	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322766264	CHEV_8_91160560	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51480439					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89363289 () rs orientation: forward

Symbol	Name	Function Class
Rr187078	regulatory region 187078	288 bp distal
Rr382438	regulatory region 382438	within coordinates
Snx20	sorting nexin 20	533 bp upstream
Tssr82357	transcription start site region 82357	674 bp upstream
Tssr82358	transcription start site region 82358	545 bp upstream
Tssr82359	transcription start site region 82359	529 bp upstream
Tssr82360	transcription start site region 82360	498 bp upstream