rs51484649 SNP Detail

Summary

• ID
  rs51484649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60961284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCAGTAC TCCTCCATGG
  CTTCTGTTTC AAGTCCAGGC CCTAACTTCC ATTAACAATA GACTGTGACC TGGAAGTGTA
  AGCCAAATAA GTCCTTTCCT TTCCTAAGAT GCTTGTGGTC AGTATTTTAT CATAGTAACA
  GAAAGGAAAC AAGAACAGTA ACTTTCAGCT ATGAGAATTT GTGGAATGAG AATAATTCAA
  R
  TGATTCCAAA CTTTCAAGTT TGAGAGATCA GCTAAGTGGT ATACCAGTAA CTGTGGTAAG
  ACTAGAAGTA AAAGAAAACT AAAGTAGTAA GAGGATGTTT TGGGGAAAAA AAACAAACAA
  AAAGACAGTA CTGATTTGAG ATCTGTTCTT CTTGGGTATC TATTATTAAG AACTCAAAAT
  CTCACAAATA GAGCAGGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52343468	NES15282529	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		G	G	G	A		A
ss323327723	CHEV_10_60588253	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51484649					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52343468	NES15282529	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60961284 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	270 bp upstream
Sgpl1	sphingosine phosphate lyase 1	within coordinates