rs51484746 SNP Detail

Summary

• ID
  rs51484746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:86236649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTAACTCT GGATTCTCAC TTGCTCTTTC TCTCTTTCTC
  ATCTATCAAA GGGGGTGACA CTAGAGCCTG GCCACTGCCT CACAACTGTC TAGAGGTTAA
  Y
  TATGAAGGAA CAGGTGACAG AACTCCTGTC AGAAGTCATC AGTCAATCCA TACTGCTGGT
  ACCTTTCTGT AGCAGGTCTG AAACTCAACC AAGGATTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60286278	NES15785348	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C		T	T		C	T	T	T		T
ss146155891	ENSMUSSNP1259876	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
ss325490003	CHEV_17_86328561	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51484746					SNP	T	T	T	T	T	T	C	C	T	T	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60286278	NES15785348	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:86236649 () rs orientation: forward

Symbol	Name	Function Class
Gm30117	predicted gene, 30117	502 bp upstream
Rr532331	regulatory region 532331	686 bp distal
Rr532332	regulatory region 532332	287 bp distal
Rr532333	regulatory region 532333	613 bp proximal
Tssr149724	transcription start site region 149724	639 bp upstream