rs51486026 SNP Detail

Summary

• ID
  rs51486026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121381109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA GTCCTGCTTT GGCTTTAACT
  Y
  ACTGAGTAGT CAAAGATGAC ACTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147390416	ENSMUSSNP4353980	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320483660	CHEV_2_121376364	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51486026					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121381109 () rs orientation: forward

Symbol	Name	Function Class
Frmd5	FERM domain containing 5	within coordinates
Rr406973	regulatory region 406973	within coordinates
Rr563848	regulatory region 563848	713 bp proximal
Tssr25942	transcription start site region 25942	1007 bp upstream
Tssr25943	transcription start site region 25943	636 bp downstream
Tssr25944	transcription start site region 25944	649 bp downstream
Tssr25945	transcription start site region 25945	725 bp downstream
Tssr25946	transcription start site region 25946	755 bp downstream