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rs51486808 SNP Detail
Summary
  • ID
    rs51486808
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr3:35390793 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACATGAGATA TTCATCATGA
    AGGCCCGGGC AGGCAGAGCC TGAGTTTGAA CCCTCCTTTC TTCAAAGGAG GATTTCTTTG
    GATGCTCCAG TTTGACTTAA TAATCCCTGC TCCTCTCCTC TCATCGATGT GACTATGTTC
    ATTTTAGCAT AAAAGAAATT TCCCTCACTA AGTACTGCAA TCACATTACC TAGTTGCTTT
    W
    AAATCTTAGA GTGTAACTAA CAGTTCAGGA AGATGGACTA AGTTCTATTC ATCTTATCCA
    CAGGACATAT TCTACTAGCC CTGTTTAGTG GGTACTAGAG AGGCTCCAGA TGGTACCAAA
    CCTGTCATTT ACCATTTCCC ACATACAGGC CTCCCTCCCC CTCTCTCTCT CTCTTTTTTT
    TTAAAGATTT ATTTATTCAC                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60386823 NES15880816 PERLEGEN MM_PANEL2 f SNP A A A A A A T A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs51486808 SNP A A A A A A T A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60386823 NES15880816 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:35390793 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm38512 predicted gene, 38512 610 bp downstream
Rr67159 regulatory region 67159 1793 bp distal
Rr67160 regulatory region 67160 208 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory