rs51486808 SNP Detail

Summary

• ID
  rs51486808
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:35390793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGAGATA TTCATCATGA
  AGGCCCGGGC AGGCAGAGCC TGAGTTTGAA CCCTCCTTTC TTCAAAGGAG GATTTCTTTG
  GATGCTCCAG TTTGACTTAA TAATCCCTGC TCCTCTCCTC TCATCGATGT GACTATGTTC
  ATTTTAGCAT AAAAGAAATT TCCCTCACTA AGTACTGCAA TCACATTACC TAGTTGCTTT
  W
  AAATCTTAGA GTGTAACTAA CAGTTCAGGA AGATGGACTA AGTTCTATTC ATCTTATCCA
  CAGGACATAT TCTACTAGCC CTGTTTAGTG GGTACTAGAG AGGCTCCAGA TGGTACCAAA
  CCTGTCATTT ACCATTTCCC ACATACAGGC CTCCCTCCCC CTCTCTCTCT CTCTTTTTTT
  TTAAAGATTT ATTTATTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60386823	NES15880816	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51486808					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60386823	NES15880816	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:35390793 () rs orientation: forward

Symbol	Name	Function Class
Gm38512	predicted gene, 38512	610 bp downstream
Rr67159	regulatory region 67159	1793 bp distal
Rr67160	regulatory region 67160	208 bp proximal