rs51489385 SNP Detail

Summary

• ID
  rs51489385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:35114466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTCTTG CTTATATGAT
  GATGGTTGAT TGTTTCTGCA TGCTGTGGCA GGAGACTTTA CCCTTAGGAA AGCTGATTTA
  CCCAAGACCT AACAGGGAAC TGGGAGACAT AATCCCCTTA ATAAGATAAA GCACTTTCAC
  CTCCCAAATG CTCTTCTCTA GATGCTATAG CTTCTAGACC TCACTACTAA ATGGACCTAC
  R
  TTTCTGAGTA ACTCAAATAT TAACTGTTCC TTTCCCCCTT CCCAGCTCTT CTTGGGACAC
  TGACCAGAAT CTTAACAGAG GCAAGCATAC TGGGGTATAC AGACAGTGCT TAGCATGCTA
  GGAGACCAGT GGAGATGGAG CCCCTCCTTG ATATGATTAT CAGCTTCCAT GTCACCTTTA
  ATTTCCCGAC TAACACTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60718097	NES16346926	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51489385					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60718097	NES16346926	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:35114466 () rs orientation: forward

Symbol	Name	Function Class
D1Mit243	DNA segment, Chr 1, Massachusetts Institute of Technology 243	540 bp distal
Gm53547	predicted gene, 53547	within coordinates