rs51490726 SNP Detail

Summary

• ID
  rs51490726
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96436046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGACATGAT GTTTGCGTTT
  CTGCAAACCA GTGAATCTAA AACACAACAA GAGCTCTTGA TGTGTAACAG GCAAGATGGA
  TGCTGCCATC CTCTGAGGGT CAAACACGCA TAAATTTCCT GTAAAATTGA GGGAGGGCAT
  ATAGAGAGCC TTGAACTTGG GGTGAACTTT GAGATTCTGT TTAGTTACGT TTAGCATTAT
  A
  GAGATCACTA ATGCATTGTG CCATGTGTCT AACAAGGCCT ACTTAGAGAT TCCAAGGCAC
  CATGGGAAGG ATAAGCCTTG TAAGAGGATC GGGCTCCTGT CCTCATGCCT CACCGCCTCC
  CTCGGAGACA CATGGTCACT CAATACTAAA TAGACGCAAA GGCGGTGCCC CCCATTTGCT
  GGCAAGACAG CAGCAGCCAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss132681547	ENSMUSSNP5804428	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss323821028	CHEV_11_96406534	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51490726					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96436046 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	1155 bp proximal
Rr252638	regulatory region 252638	1447 bp distal
Rr252639	regulatory region 252639	556 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	497 bp downstream
Tssr104544	transcription start site region 104544	153 bp upstream
Tssr104545	transcription start site region 104545	206 bp upstream
Tssr104546	transcription start site region 104546	214 bp upstream
Tssr104547	transcription start site region 104547	256 bp upstream
Tssr104548	transcription start site region 104548	350 bp upstream
Tssr104549	transcription start site region 104549	363 bp upstream
Tssr104550	transcription start site region 104550	421 bp upstream
Tssr104551	transcription start site region 104551	449 bp upstream
Tssr104552	transcription start site region 104552	470 bp upstream
Tssr104553	transcription start site region 104553	1807 bp upstream