rs51490940 SNP Detail

Summary

• ID
  rs51490940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127290925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTTAACA TTTTACTTCC
  TAAATATTTG CATCTAAGTG TTACACGCAC ATAATAACAA AATTAGCCAA TACAGTTATA
  AAAATGATTT TTGCTTAGCA TGCGATTTCT CTTACATGAC AAACAGTAGC ATCATATTCA
  TTCTTACATG CATAACTACT TCTAACCCAG ATTTAATACC TGTTCTCACA ATTCCAAAGG
  R
  AAAAAAATAA CTTGAAGTGC AATTTAAAAT ACTATCATAA AACTAGAATC CTGGCCCCAT
  AAGGATTTCA AACTCTAGCA ATTCCTTTGG AAACAGACTG ACATAAAAAG AAATTCTCGT
  TAAATTTTAG GTATTACATT TAAAACCTCC ATTAAAAGAG TATACCGTAA TGCAACTCTA
  CCTAGAGATA TCAGGGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss61079253	NES16587037	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	A	A	G	G	G		G	G		G
ss135865071	ENSMUSSNP6096540	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320954679	CHEV_3_127200194	CHEVERUD	SCREENING_POP	f	SNP												G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs51490940					SNP	A	A	A	G	A	G	A	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079253	NES16587037	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127290925 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13791	CpG island 13791	1056 bp proximal
Rr584800	regulatory region 584800	1715 bp proximal
Tssr35576	transcription start site region 35576	1710 bp downstream
Tssr35577	transcription start site region 35577	1773 bp downstream
Tssr35578	transcription start site region 35578	1800 bp downstream
Tssr35579	transcription start site region 35579	1819 bp downstream