rs51491387 SNP Detail

Summary

• ID
  rs51491387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60732230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TACCCGGCTT GGCGGGTATC CACAGGCTCC GTGCTCACTG
  GTCAGTCCTG AGGTGCAGGG AGGCAGCATG CCTAAGCTCT GTTTCCTAAC TCGGGGTGAT
  Y
  CCCTTATATG ACGTCAGTAC AGCCTCACCC CACTACTTAA GATAAACAGG AATGAGTCTC
  TCTCACAAAG TGGCCTGCTT AACAAATACT AACAGAGTTT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss146652219	ENSMUSSNP5097749	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs51491387					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60732230 () rs orientation: forward

Symbol	Name	Function Class
Gm74814	predicted gene, 74814	22 bp upstream
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Rr396989	regulatory region 396989	1373 bp upstream
Rr557735	regulatory region 557735	33 bp distal
Rr557736	regulatory region 557736	within coordinates
Rr557737	regulatory region 557737	665 bp proximal
Rr557738	regulatory region 557738	1677 bp proximal
Tssr17890	transcription start site region 17890	59 bp upstream
Tssr24237	transcription start site region 24237	876 bp downstream
Tssr24238	transcription start site region 24238	948 bp downstream