GAAGG GCAGGCAGGG AAGCAGGTCG R CAGGTAGCAA AGACTTGGAA TCTGG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
BALB/cByJ |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss60644355 | NES16270730 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | G | A | A | A | G | A | A | G | A | ||
ss145390131 | ENSMUSSNP4395212 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | A | ||||||||||||
ss322750918 | CHEV_8_87122734 | CHEVERUD | SCREENING_POP | f | SNP | A | G | ||||||||||||
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | A/J |
BALB/cByJ |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs51493447 | SNP | A | A | A | G | A | A | A | A | G | A | A | G | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss60644355 | NES16270730 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr8:85325464 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cacna1a | calcium channel, voltage-dependent, P/Q type, alpha 1A subunit | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Cpgi20697 | CpG island 20697 | 1746 bp proximal | ||||||
Gm64375 | predicted gene, 64375 | within coordinates | ||||||
Rr666538 | regulatory region 666538 | 1404 bp proximal | ||||||
Tssr78403 | transcription start site region 78403 | 1685 bp downstream | ||||||
Tssr78404 | transcription start site region 78404 | 945 bp downstream | ||||||
Tssr78405 | transcription start site region 78405 | 915 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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