rs51493843 SNP Detail

Summary

• ID
  rs51493843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33857446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGAACAG AGCTAGAACA
  GTCTTGGGGA TGAGATGGCA CAGGAAAAGA TAAGAAACAA CCAAGGCATA ATAGCTTGAG
  CTCTTGTGGA CCAGCTTTGT ATCTGTGACT GCAAGGCAGT GTGGTGCTGG TTGGGTCTGC
  CTGGAATGAT ATACCCTCAA TCCAGGTCAG CAGCTGGGAT ATAAGCAGAG GTTTCCTGTG
  R
  AGTGATTAAA TGGGTCACGC ACCTGCTACA CCAGTCCCCA TCTCCAGTCC GTTACCCAAG
  CTGTGCTCTG CTAAACCCTT CCTTATCTAC CCTTGTGGTC ATCAACTCAC TTAGACTGGG
  GCTTCAACAA AGAAATGTCT GACCCCAGGC AAGAATTGCT TCCTTCCCAG AGATCCTTCT
  GAGTCCATCT CTAGATAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss62686868	NES17316526	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51493843					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62686868	NES17316526	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33857446 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	1021 bp upstream
Tssr143785	transcription start site region 143785	660 bp downstream
Tssr143786	transcription start site region 143786	642 bp downstream
Tssr143787	transcription start site region 143787	362 bp downstream
Tssr143788	transcription start site region 143788	349 bp downstream
Tssr143789	transcription start site region 143789	331 bp downstream
Tssr147440	transcription start site region 147440	1439 bp downstream