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rs51495521 SNP Detail
Summary
  • ID
    rs51495521
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:49316034 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGGTGGGCC GTTGCCATGT
    CTCAGTGTTA AATGTCTCTC TGCCATCCTC CCAGGCGAGG ATGCTGCATC CATCATGGGT
    CTGGGGTTTG CCCTCTTGTT CATATGGAGC ATTTGCCAGT TAATGCTTCA TGGTTAGTGC
    TGGCCAGGCA GTAGCACCTG CACACAAACA CGAATGCAAA GCCCAAAGCC TCTGCATTTG
    Y
    CCTCAGCATG GAGCCAGAGG CTGCTGGAGT AGCCTGGAGT AGGTCAGAGC AGGTCGCCGG
    CCCTGTGCCC TGGCTCCCCA CCCCCGTTCC CCATGGAGCT TCAGGGTCTG GCTTTTATGG
    GGGTAATTTG CTTATGGGGC TCTCCTGTTC TGCCTTCACT AGTTCTCCAC CTGCCTGGTC
    CAGCCTCCTT ATACCTACTC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
ss133169973 ENSMUSSNP4725741 ENSEMBL ENSEMBL_Sanger f SNP T C T
ss321795979 CHEV_6_49289099 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
rs51495521 SNP T C T C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:49316034 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ccdc126 coiled-coil domain containing 126 within coordinates
Rr629883 regulatory region 629883 43 bp distal
Tssr60889 transcription start site region 60889 405 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory