rs51497006 SNP Detail

Summary

• ID
  rs51497006
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88132796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAGAAAAT GTCTCCTTAG ATCAGCCTGT AGGCAAGCTT
  ATCAATTATG GGGCATTTTA TCAATTAGTG ATCGATGGGT AGGACCATCC AGATTGATGG
  W
  CCTGGGTTCT ATAAGGAAGC AGACTGAGCA AGCCAGTAAG CAGCACCACT GCATGGCCTC
  TGCATCCGAT TCTGCACTGC CTCCTGCCTC CAGGTTCCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146186043	ENSMUSSNP1270536	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss325500229	CHEV_17_88224708	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51497006					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88132796 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9633	CpG island 9633	939 bp proximal
Cpgi9634	CpG island 9634	1618 bp proximal
Gm50039	predicted gene, 50039	within coordinates
Rr393080	regulatory region 393080	1488 bp downstream
Rr532768	regulatory region 532768	820 bp proximal
Tssr146214	transcription start site region 146214	549 bp upstream