rs51497325 SNP Detail

Summary

• ID
  rs51497325
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63218194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCAAATAT AAACAAACGA AAATCGCAAA CTCCCATCGG
  AACGTTCATT GGTGTCCAGA TCCCGGGAAG GGAAACGGTT GCAGGTCATT TCTGGTGCTC
  W
  GGGATTGCCT TCCGGACGCC GCTGAGACTT GGAAGAATCT TAAAGGGAAG ACGGGAGCTG
  ACACCATTTG CACGGAACTT TGGGGCGCGC TCGGAGGAGA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss52347176	NES15278314	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs51497325					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52347176	NES15278314	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63218194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1649	CpG island 1649	560 bp distal
Cpgi1650	CpG island 1650	within coordinates
Dnajc12	DnaJ heat shock protein family (Hsp40) member C12	28 bp upstream
Gm66647	predicted gene, 66647	within coordinates
Rr215754	regulatory region 215754	407 bp proximal
Rr224928	regulatory region 224928	within coordinates
Rr369009	regulatory region 369009	within coordinates
Tssr97916	transcription start site region 97916	329 bp downstream