rs51497473 SNP Detail

Summary

• ID
  rs51497473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113172507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTA GCGGGCGCTT CCCAGTGTCC
  R
  GCTCCACAGA GGATGAAGTG TGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145257031	ENSMUSSNP3555729	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51497473					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113172507 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	within coordinates
Cpgi6107	CpG island 6107	447 bp distal
Mir449a	microRNA 449a	1561 bp upstream
Mir449b	microRNA 449b	1446 bp upstream
Mir449c	microRNA 449c	10 bp upstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	10 bp proximal
Rr486471	regulatory region 486471	584 bp distal
Rr486472	regulatory region 486472	131 bp proximal
Tssr121165	transcription start site region 121165	742 bp downstream
Tssr121166	transcription start site region 121166	1637 bp upstream