rs51498027 SNP Detail

Summary

• ID
  rs51498027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27536589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGCTAT GCACACACAG
  AGCAGGAGAC AGAGGCAGAA AGAGCTGAGA GCTGAGACTG GGGATGTGGC CTGCAGCACC
  CCAGGAAGAA TTCAAGTGAC TGTAGCTAAG GAAACACTTA TGGTGGACAT TAATCTCTAG
  TTACGTATTC AGCGCCCCAT GGCTCCTGTG GAGAAAACAG AGGGCAATTA ACTGATTTTA
  Y
  TTCCATGAAG GATAAGGGGT AGCACTAAGA AAAGAACTGT GACACAGGAA AGATGGAGCA
  GACCGACCAG AATCACACTG TGGAGAGAAA GGAGGACGGA ACACATTGGA TGACAGAAGG
  CTAAGCATCT TTATAAATGA TCCAAAAGCC GGTGAAACAA AACCCAAGCT TTGCAGAAGC
  AGTCACTTGG GTCTGTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60985124	NES16142792	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51498027					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60985124	NES16142792	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27536589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18676	CpG island 18676	1303 bp proximal
Gm74121	predicted gene, 74121	within coordinates
Rr155698	regulatory region 155698	1989 bp distal
Rr167341	regulatory region 167341	811 bp proximal
Rr380558	regulatory region 380558	579 bp upstream
Tssr65334	transcription start site region 65334	1378 bp upstream
Tssr65335	transcription start site region 65335	1396 bp upstream
Zfp59	zinc finger protein 59	1443 bp upstream