rs51500509 SNP Detail

Summary

• ID
  rs51500509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55518316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTTCTTTG GGCAGCCCAG GACGGGTCAG TAAGGGCAGG
  ACAGGAAGAT CAGCTCTGTC TGGTCTATTC CTAGCTTCCA GGAAGGGTGT GTGTGTGTGT
  R
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG CGTGCAACTT AGTATAGGAT GCCCTGGTTG
  CAGCCCTAAC CCATTAGACC TTCTCCAGGC TGTTTAACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss149036064	ENSMUSSNP624329	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324345358	CHEV_13_55471864	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51500509					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55518316 () rs orientation: forward

Symbol	Name	Function Class
Rgs14	regulator of G-protein signaling 14	within coordinates
Rr369713	regulatory region 369713	673 bp downstream
Rr480443	regulatory region 480443	1898 bp distal
Rr480444	regulatory region 480444	1678 bp distal
Rr480445	regulatory region 480445	761 bp distal
Rr480446	regulatory region 480446	37 bp distal
Rr480447	regulatory region 480447	844 bp proximal
Tssr119942	transcription start site region 119942	737 bp downstream
Tssr119943	transcription start site region 119943	728 bp downstream
Tssr119944	transcription start site region 119944	690 bp downstream