rs51500668 SNP Detail

Summary

• ID
  rs51500668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30738110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAACTGAAG AAATTACAAG AAGTACTCTA AATTATATTA
  TACTCCAAGA AAAAGTATAA TTATTATTTA GAAAAAAAAA ATCTAAAGAG ATCCAGACCT
  R
  AACAGAAGCT ATGGCTGAGC ACTCACCGGA AGTGTTTATA AACATCTAGT GCTCAACTTT
  TAAAAATGGG TCAATGAAAA AGAGATTTTT GTTTTTAAGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60989525	NES16136108	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51500668					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989525	NES16136108	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30738110 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	within coordinates
Gm71772	predicted gene, 71772	1372 bp downstream
Mir7050	microRNA 7050	1573 bp downstream
Rr368303	regulatory region 368303	1785 bp upstream
Tssr65831	transcription start site region 65831	1677 bp downstream
Tssr65832	transcription start site region 65832	1268 bp downstream
Tssr65833	transcription start site region 65833	829 bp downstream
Tssr65834	transcription start site region 65834	798 bp downstream
Tssr71892	transcription start site region 71892	1591 bp upstream
Tssr71893	transcription start site region 71893	818 bp upstream
Tssr71894	transcription start site region 71894	795 bp upstream
Tssr71895	transcription start site region 71895	766 bp upstream
Tssr71896	transcription start site region 71896	736 bp upstream
Tssr71897	transcription start site region 71897	374 bp downstream
Tssr71898	transcription start site region 71898	1523 bp downstream